The 2,075 samples collected for Dog10K were selected to represent a wide variety of breeds of differing morphology, history, and behavior. Primary SNV and small indel variant discovery was performed on 1,987 samples fulfilling initial quality threshold. Sample information, including inclusion status in these different sample sets, is described in the file dog10K-alignment-sample-table.2022-02-23-v7.txt. The posted SNV VCF file contains variants from 1,987 samples. We have integrated VCF files into a visualised table where users can enter the chromosome number along with the start and end positions to retrieve the corresponding VCF information for the specified location.
Variant files and associated annotations from Dog10K consortium are available at https://kiddlabshare.med.umich.edu/dog10K/ and at https://zenodo.org/record/8084059.
This work was published in Genome Biology at 2,023 by Jennifer et al. (https://doi.org/10.1186/s13059-023-03023-7).
Analysis methods: https://kiddlabshare.med.umich.edu/dog10K/Dog10K-data-release-note.pdf
VCF file format: https://samtools.github.io/hts-specs/VCFv4.2.pdf
Totally results Found.
