Dog10K Database
DOG10K
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SNVs
DNMs
scRNA
Hippocampus
Leukocytes
DEGs
Aging transcriptome
Gene expression patterns
Similar genes
Genome Browser
Broad_CanFam_3.1/canFam3
UU_Cfam_GSD_1.0/canFam4
UMICH_Zoey_3.1/canFam5
Dog10K_Boxer_Tasha/canFam6
Analysis
LiftOver
Selscan
AgeConversion
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Please browse to download data:
Genome
Fasta
Canis_lupus_familiaris.Broad_CanFam_3.1/canFam3_genomic.fa.gz
GCF_011100685.1_UU_Cfam_GSD_1.0/canFam4_genomic.fna.gz
GCF_005444595.1_UMICH_Zoey_3.1/canFam5_genomic.fna.gz
GCF_000002285.5_Dog10K_Boxer_Tasha/canFam6_genomic.fna.gz
Annotation
Canis_lupus_familiaris.Broad_CanFam_3.1/canFam3_genomic.gff.gz
GCF_011100685.1_UU_Cfam_GSD_1.0/canFam4_genomic.gff.gz
GCF_005444595.1_UMICH_Zoey_3.1/canFam5_genomic.gff.gz
GCF_000002285.5_Dog10K_Boxer_Tasha/canFam6_genomic.gff.gz
Aliases
Broad_CanFam_3.1/canFam3_aliases.txt
UU_Cfam_GSD_1.0/canFam4_aliases.txt
UMICH_Zoey_3.1/canFam5_aliases.txt
Dog10K_Boxer_Tasha/canFam6_aliases.txt
Variation
SNVs
Dog10K.SNPs.vcf.gz
Dog10K.SNPs.vcf.gz.tbi
Dog10K_sample.txt
DNMs
643_Pedigrees.SNPs.xlsx
family_tree.csv
VCF to PLINK
recode
dog10k_SNPs.map
dog10k_SNPs.nosex
dog10k_SNPs.log
dog10k_SNPs.ped
make bed
dog10k.SNPs.plink.bed
dog10k.SNPs.plink.bim
dog10k.SNPs.plink.fam
dog10k.SNPs.plink.log
dog10k.SNPs.plink.nosex
scRNA
Hippocampus
analyzed.h5ad
cell_type.xlsx
Leukocytes
GSE225599_dataSet_H.rds.gz
GSE225599_dataSet_HvO.rds.gz
Aging transcriptome
Dog
dog_information.txt
dog_both_ortholog_cpm.txt
Human
human_information.txt
human_both_ortholog_cpm.txt
